KSP Version: 0.1.1.0.21572
Replicate: Use multiple pairs of docking ports to ensure that a craft assembled in orbit is rotation aligned along the Z axis (where X is horizontal and Y vertical and Z extends nose to tail along the craft)
Expected: Both docking port pairs dock, leaving the two craft perfectly aligned.
Observed: Only one pair of docking ports docks, the other is mis-aligned.
https://1drv.ms/i/s!ApUJU8rhQSAUqZ11e7Niuruqu9O1-g?e=2P9Ysa
It causes the alignment to be off, like this:
https://1drv.ms/i/s!ApUJU8rhQSAUqZ12ibQqS6R3i_2O5A?e=1VZgC3