RemoteTech- Flight Computer Bug

[NASAHireMe]

I've encountered a bug or something with RemoteTech. Pictured here is a mission to Gilly, currently inbound to an Eve aerobrake/aerocapture. My Flight Computer has stopped working. When I issue a command, it is sent to the Flight Computer's queue. However, the actions are never executed, and my attempts to cancel the commands just pile onto the queue and sit there.

I would just ignore the Flight Computer and play it manually, but the Flight Computer is preventing me from using timewarp. When I try to increase timewarp, it automatically and immediately throttles the timewarp back to 1x in order to execute the next (instantaneous) command from the queue, but the command does nothing.

I suspect it may have something to do with the fact that I recently switched over from playing with time-delay to playing without time delay.

Is there a way to delete the Flight Computer's queue for this vessel in some config file somewhere? I looked around a bit, but I can't find where RemoteTech stores current Flight Computer commands. Or is there some other way to clear the queue?