I am experiencing really strange behavior from MechJeb, RemoteTech and KSPI modules at the same time. This is what happens:
I spawn a cargo ssto and fly to the station in orbit.
Dock with station and transfer cargo.
Build a station module with EL dockyard and dock it to the station. Everything is working without any problems.
Undock ssto. RemoteTech reports N/A instead of local control for ssto(station has local control). Both vessels have crew that can fly them.