Cannot stage separate or toggle SAS/RCS after time warping anywhere inside Kerbin's atmosphere

[Second Hand Rocket Science]

I've not talked here for a very long time (two years ish) but this bug is really getting on my nerves. I can't toggle SAS/RCS or stage separate after time warping inside Kerbin's atmosphere. This doesn't happen when time warping outside of Kerbin, but the effect persists if it's happened before escaping Kerbin's atmosphere while in space.

Modlist printed from CKAN:

Astronomer's Visual Pack (AstronomersVisualPack 3:v4.13)
Astronomer's Visual Pack-8k Textures (AVP-8kTextures v1.13)
B9 Part Switch (B9PartSwitch v2.20.0)
Breaking Ground (BreakingGround-DLC 1.7.0)
Environmental Visual Enhancements Redux (EnvironmentalVisualEnhancements 3:1.11.7.1)
Kerbal Engineer Redux (KerbalEngineerRedux 1.1.9.0)
Making History (MakingHistory-DLC 1.12.0)
Module Manager (ModuleManager 4.2.3)
PlanetShine (PlanetShine 0.2.6.6)
PlanetShine - Default configuration (PlanetShine-Config-Default 0.2.6.6)
Real Plume (RealPlume 2:v13.3.2)
Real Plume - Stock Configs (RealPlume-StockConfigs v4.0.8)
ReStock (ReStock 1.4.3)
ReStock+ (ReStockPlus 1.4.3)
RSMP - Remastered Solid Plume Effects (SRBWaterfallEffects 2:0.4)
Scatterer (Scatterer 3:v0.0838)
Scatterer Default Config (Scatterer-config 3:v0.0838)
Scatterer Sunflare (Scatterer-sunflare 3:v0.0838)
SmokeScreen - Extended FX Plugin (SmokeScreen 2.8.14.0)
Stock Waterfall Effects (StockWaterfallEffects 0.7.0)
Waterfall - Restock (WaterfallRestock 0.2.3)
Waterfall Core (Waterfall 0.9.0)
 

As you can see I don't use part mods, just graphics. If anyone could help that would be appreciated.

PS: I also have a niggly little issue where SRBs still have plumes and make sound after they run out of fuel. If anyone could also help with that it would be great, but it's not that important

Cheers,

SecondHandRocketScience

Oh, I nearly forgot a log! Here it is:

https://www.dropbox.com/scl/fi/h60wk1uwyv0rdqtxvrix8/Player.log?rlkey=etvtg5y8in7yr0qsz2vmvnycu&dl=0