Okay, so I have tried a few things with no success saving the craft. First, it's not FAR assists, those default to 'off' and I barely use them. Second, I have checked the Kerbal Engineer and there will be a huge torque, but only when I'm on the retrograde marker-side of my vectors. For some reason, it doesn't want to point retrograde at all (this is why I got so angry yesterday when I couldn't land a basic, teeny-tiny probe because it kept flipping around). But it seems to settle really nicely on the prograde side and will obey pointing commands with SAS on. Also, I keep hitting Option+X for resetting trim (I'm on OS X) and I think it's resetting? I'm honestly not sure. Right now, I'm trying to remake the probe in the VAB and balance it better (grid-snap on, symmetry for all parts) and see if I can make a better probe. Thanks to all, hopefully this doesn't become a thing that makes my current save unplayable.