That's right! What your experiencing is identical to what I was. Scatterer is the only mod that affects both the ocean and the atmosphere, so it has to be the culprit. A good way of confirming that it is indeed Scatterer is turning the ocean shader off, doing this should get rid of the glitch as well.
Assuming it is indeed Scatterer, you just need to download the newest version.
Here's the glitch I was experiencing, just for further confirmation.
Kronus_Aerospace's post in "Dryed up" oceans and "flipped world"- glitch. was marked as the answer