I am trying to dock my Spacecraft to my Space Station and I ran into this problem where the docking ports were not magnetizing. With the module I was trying to dock them to I used the Gizmos in the VAB to clip the docking port into the fuselage and I think that might be a part of it but if you have anything to try to fix this please help!
http://imgur.com/gallery/xuYKRpi/new