SPH Bugs - Launch spawns in the middle of Kerbin, parts missing off vessel

[Tribute_R]

Hi guys,

This is my first post and I have read the rules and I do apologise if I missed something important.

1) I am still on the 0.90 version, some of my mods are not yet compatible with the latest version of KSP, should I update regardless?

2) I do think some mods may be outdated, I will post versions to clarify.

Now the issue:

I have been building ships in the SPH, sometimes I would launch and I would be in the middle of the planet Kerbin. When I return to the SPH my ship is missing parts. Sometimes I wouldn't be able to select and move parts and the part toolbar on the left would be greyed out. I've tried a new install with all the mods added again and the same thing happened.

Maybe it's the version of 0.90 I got from a link? (I updated only to realise some mods were not supported yet in 1.0.2.)

Log file: https://www.dropbox.com/s/ybue8oc0qaedhut/output_log.txt?dl=0

Thanks for the help and advice, I appreciate your guys help!

(Mods added below)