Mods breaking in a specific save

[voicey99]

This is a weird one. In one of my saves so far, two mods have spontaneously stopped functioning, namely Stock Visual Enhancements and Janitor's Closet (SVE broke several months ago, JC yesterday). SVE has stopped displaying clouds and aurorae on any of the planets (those provided by other mods are unaffected), while JC has spewed all of its previously hidden cluttering icons back onto the toolbar, and alt-rightclicking on them either brings up the menu to hide them for the top five icons only (and then does nothing on clicking 'hide') or does not bring up the menu at all, in both cases rendering them unhideable. What is different about this is that it only seems to apply to that save-if I make a new save, the clouds will reappear on the planets while JC (after a reinstall) will hide icons like normal but breaks permanently again on loading the breaking save.

I can't seem to make either mod work again for the life of me. I've reinstalled both manually, hard reinstalled KSP and stripped out every single unnecessary mod, but they both stubbornly refuse to work on that particular save only. What is also odd is that nothing changed in the save between them working and not-no mods were added or removed, no vessels were launched and no configs were changed. All it took to trigger this was a restart of KSP.

Offending save

Log from during my attempts to fix JC, if it helps.

Mods:

Spoiler

Alternate Resource Panel 2.9.1
AT_Utils 1.4.2
Filter Extensions 2.8.1.2
USITools 0.8.19
Asteroid Day [no version provided]
Audio Muffler Redux 2.4.0
AutoLoadGame 1.0.6
B9PartSwitch 1.7.1
Bases And Stations 3.6.1 (contracts)
BetterBurnTime 1.5.3
Better Crew Assignment 1.3.0
BOSS 3.0.3
CameraTools 1.8.0
CIT 1.3.0
CleverSat 1.4.0 (contracts)
Coherent Contracts 1.0.2?
CollisionFX 4.0
CommNetConstellation 1.0.1
CommunityCategoryKit 0.1.2.2
CommunityResourcePack 0.6.7
Configurable Containers 2.4.0.5
Contract Configurator 1.22.2
ContractParser 1.0.5
Crowd Sourced Science 4.0.1
CTTP [N/A]
Custom Asteroids 1.4.1
CustomBarnKit 1.1.12
Decal Stickers 1.3.0
Distant Object Enhancement 1.8.1
EngineLight 1.5.0
Environmental Visual Enhancements 1.2.2-1
Field Research 1.2.0 (contracts)
MKS Explainer 0.6.0
Docking Port SFX 2.1.12
Ground Construction 1.1.2.1
HoldTheMonoprop [N/A]
HyperEdit 1.5.3
Janitor's Closet 0.2.20
Jool Biomes 1.0
Jool Rings [no version provided]
KAS 0.6.2
Kerbal Alarm Clock 3.8.4
Kerbal Konstructs 0.9.8.9
KIS 1.4.4
Kopernicus 1.2.2-5
Kronal Vessel Viewer 0.0.6
KSC++ 3A?
KSP Rescue Pod Fix 1.0.0.6
MechJeb2 2.6.0
MechJeb And Engineer For All [N/A]
MemGraph 1.1.0.3
Modular Flight Integrator 1.2.4
Module Manager.2.7.6
Near Future Construction 0.7.6
Near Future Solar 0.7.2
NEBULA Decals 0.1.1.3
Olympic1ARPIcons 0.10.3
OPM 2.0.0
Planet Cyran 3.0.0
PlanetShine 2.5.2
OPM-VO 0.3.4
Procedural Parts 0.10.2.1
ProgressParser 1.0.6
RasterPropMonitor 0.28.0
Realistic Atmospheres 1.2.3
RealPlume 0.11.4
Reentry Particle Effect 1.2.0.1
Retractable Lifting Surface 0.1.3
SCANsat 1.1.6.11
scatterer 0.0.3
Science Relay 1.0.3.1
SigmaBinary 1.6.2
SmokeScreen 2.7.2?
Solver Engines 3.1.0
Stock Visual Enhancements 1.2.2
Strategia 1.5.0
Stock Visual Terrain 2.0.0
Stock Extension Continued 0.3.12.1
TakeCommand 1.4.8
Texture Replacer [no version provided]
Toadicus Tools 0.22.0
Tough Love [N/A]
Tourism 1.5.2 (contracts)
Transfer Window Planner 1.6.1
Tweakable Everything 0.1.29.2
TweakScale 2.3.4
USI Karbonite 0.8.9
USI Konstruction 0.1.13
USI Life Support 0.5.25
USI Modular Kolonisation Systems 0.51.0
[Various other USI part packs]
Ven's Stock Revamp 1.9.5
ZeroMiniAVC 1.0.4

Edited August 23, 2017 by voicey99