Yes, it would take enormous energy and yes, it would take technology we haven't thought of, but there is nothing in physics that says you can't rearrange nuclear matter at will. Ultimately, it's an engineering problem. Your Santa Claus machine is possible, except... You are limited by quantum mechanics and Heisenberg's uncertainty principle. It would be impossible to obtain an exact particle by particle code to replicate an object because the details of individual particles are fuzzy and do not exist as exact values. The reason things seem so concrete to us at a macroscopic level is because the quantum fuzziness gets ironed out by Avogadro's number. That being said, I am convinced you could get pretty close. Bucket of chicken from air? It doesn't need to be exact. I'm ok if a few thousand protons are in the wrong place on my drumstick. Besides, I wouldn't be able to tell. I'm macroscopic!