I think this is a common problem, but I think I may have found a solution (at least, it's working for me with this and 2 dozen other mods installed, so it seems stable enough): When loading the game, before you enter the VAB or SPH or launch anything, open up the Tracking Station and just look at that for the second it takes it to center on Kerbin. Close out of that and then go into the VAB or whatever else. And any other time you start to repeat-launch into Blacky Karman, go back to the Space Center and open the Tracking Station from the Center (ie don't use a quick button or just open the Map, actually go back to the full Space Center and then go to the Tracking Station). That has worked for me so far. @Duracelle: With this in mind, is it possible that info could help point out why the bug exists in the first place? Maybe sometimes the game sees Blacky Karman as the center of the universe and focuses on that instead of on Kerbin as a default location and spawns the ships inside of it, but opening the Tracking Station reminds the game that Mission Control on Kerbin should be the focus, which fixes it?