I had an issue with this mod yesterday. It seems if you install it when you already have ship a space using stack separators attached attached radially (I used radial attachment nodes), the mod changes them to Horizontal Separation Manifolds. That would be fine, except the ship blows up if I engage them! I tried remove the mod, but it completely broke the ship (no parts function - the inline command module detached and floated away). I did not try to build any new ships with the mod and test those. This was just on one existing ship. My other ships without stack separators were fine.