I can also report serious problems with a fresh install of KSP 1.0.2. My setup is a TM Hotas Warthog (with FSSB R3 Mod) and Saitek Combat Rudder Pedals. When using the FSSB R3 my problem is the following: Also when setting the axis the popup window recognizes "Joystick Axis 1" as input. After saving it's showed as "JoystickAxis 1". When using the warthog module (original board inside the FSSB) everything is working fine. This is however not ideal since the FSSB board allows me to do more with the stick.
