Hmmmm? What I thought I posted there yesterday seems to be gone today. I probably forgot to hit the right button. Getting old sucks!
Yesterday I would have sworn that all the mods in my KSP 1.9.1 install where up to date and the correct version, but after looking at the debug file I thought I posted yesterday, I checked again. Scatterer and GPP where old versions. I replaced them and started a new game and so far so good. I've mapped several orbits and it seems to be working as it should. Everything looks better and is running smooth again.
To sum up;
For those experiencing the issue where all the planets and orbits suddenly show up the problem is not with this mod (Research Bodies). I grantee it. I can play all the way through without issues until I install Kopernicus and planet packs. Make sure you are using the correct version of Kopernicus and all planet packs for your install.
Personally, I have no less then three different versions of KSP installed at any time. Right now versions 1.10.1 and 1.11 are waiting for the modding community to catch up. I'm playing 1.9.1 because the other versions don't meat my minimum requirements of mods to play yet. It can be hard to keep track of. The embarrassing part is that making sure you're files are up to date is the first step in debugging or testing and I just spent the last five days playing with old files. Sigh!
The best advice I can give on this issue is to check your file versions for compatibility.
BTW, Thanks again JPLRepo for maintaining this Awesome mod.