Each time I drilled the ore from a planetary surface, I wondered is there a mod or plugin that specifies the ore I collected in the ore tank, like "Eve Ore", "Duna Ore", "Tylo Ore", etc. The module can be the same as the stock ore system, except for the names that they are called.
Before mining, this is how the pop-up window of the ore tank should look like:
*no resource bar
After one started surface harvest on a planetary body:
*resource bar appear, with the name of the resource (eg. MunOre, MinmusOre, DunaOre)
Of course the ore that is filled inside the VAB will be called "KerbinOre".
For the drills:
It can just be increasing the amount of (X)Ore in the ore tanks.
The (X)Ore refers to MunOre, MinmusOre, DunaOre...
For the ISRU:
Just take all of the (X)Ore as normal ore, and do the conversion.