My PC will not load KSP, Non Steam

[HamnavoePer]

So, I just got around to updating KSP from the website, as I do not have the game on steam. I have a few mods installed from CKAN (BD Armoury, KAS, KIS). The game is now stuck while loading squad/parts/aero/fairing/fairingsize1/fairingsize1. I have searched the game files for this file, and according to my PC, it doesn't exist. HELP ME!

[Geonovast]

Will it start without the mods installed?

Did you uninstall the old copy before installing the update one, install it to a different location, or just install overtop of the old on?

[HamnavoePer]

It won't start with or without mods, I normally install into a new KSP file, so that I have a variety of saves/back-ups

[linuxgurugamer]

Log file would be useful.