Okay, so, I'll admit two things right off the bat:
1. 64 bit work around. If that answers it all, I wouldn't be surprised, but I'm too in the deep-end to try reverting to 32-bit.
2. 125 folders in my GameData directory. That's at least 125 mods. Heh, yeah, a lot. Sorry. XP
So, I decided to download Kronal Vessel Viewer, looked fantastic, only, when I open it to setup a screenshot, it only displays a single, stretched texture. Initially, it's my flag, but moving around using the keys yields different textures for the variety of parts on my current ship. Would anyone perhaps know anything about this, or how to fix it? If more info is needed please let me know, I'd be happy to grab what I can if it'd help.